No, Mendelian genetics works perfectly to describe what is happening. The confusion lies not in the ability to describe the method of inheritance, but the in the inability to accurately determine the nature of what is being inherited.
At this point you don't know what the snake is, whether you are referring to the phenotype or the genotype. Test breedings will help determine that.
You can only apply Mendelian principles after you have determined what you are dealing with.
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A phenotype is just a vague reference point in finding out the genotype. Crap!!
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Unfortunatly this is essentially true, especially in reference to reptiles. The problem is with the complexity involved in each process.
Take each pigment and prefix it with an "a", with "hypo", or with "hyper", then realize that each of these conditions are controlled at multiple loci and involve the participation or inhibitance of several enzymes. Then throw into the mix such conditions as leucism, piebaldism, calico, etc, and you see the extreme complexity of the subject matter. There also exists many traits in snakes particularly that remain misunderstood.
Gene mapping would be most helpful in furthering our understanding of the processes, but the probability of that being pursued anytime in the forseeable future is unlikely.
Only test breedings can shed light on the underlying causes of what you are dealing with.
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I think you've got me convinced on the single non-specific pigment related gene theory. And until someone has a better idea or my breeding outcomes imply differently, it's the theory I'm going to go by...I guess.
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I tend to agree with this theory. I believe leucism is controlled by a genetic process with much wider governing ability that those which control single pigments. I also believe that the genetic process responsible for this is not as complex as the processes it controls involving individual colors and patterns. This assumption would be supported by the fewer instances of the trait being expressed.
However, if your breeding outcomes imply differently, it does not automatically mean that this theory of leucism is inaccurate. It may also mean that you are not dealing with true leucism at all.
Remember, just because a breeder labels an animal leucistic does not mean that is what it is, look at the original "leucistic" leopard geckos.