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A couple of things,,
The eggs that are yellowish, are probably not fertile, or are eggs with dead embryos,, So I would discard them for sure,,,
A good egg should be white, and turgid to the touch,, ALso you should not handle or move dragon eggs once the embryos start to develop,,
Another thing that would help if you are using a hovabator is to use an incubation box to put the eggs in,, I Don't use a hovabator, but i have friends that do,, and you can buy disposable gladware that will fit in the hovabator,, and it need 2 very small holes in the top for some air exchange,, put the perlite or vermiculite in it 1:1 by weight and place the eggs in it 1/2 buried. and leave it alone! don't mist it, and don't mist the eggs for sure! once a week, open the top and let some fresh air in, and if needed add a little water, but it should take very little, and add it to the pearlite or vermiculite, not next to the eggs,,,
I have never had a female lay eggs on different days,, all mine lay all their eggs on the same day, in usually about a 1-2 hour span,,
I am assuming you had a seperate egg laying bin..? ( egg laying bin is a seperate container that has 12-16 inches of moist sand, most females will dig a nice deep hole, spin around head out, and lay there eggs in the bottom of the hole...) It is possible that the female may have had a hard time laying, or no suitable egg laying site was provided,, either way,, it is not normal in my collection for a mutiple day lay,,
As far as the fungus goes,, i usually discard eggs with fungus on them,, it is very rare with my eggs,, so i don't really have that problem,, but it can over take good eggs,,so i would seperate them for sure,,,
Hope some of this helps,,,and feel free to drop me a line,, if needed,,,
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