Hi Mike,
For sealed containers, our protocol at the Bx Zoo was to look in every other day (every day as the incubation period neared it's end). But changes were made with first-time breedings, little known species, etc. Often eggs went for several days w/o being checked 9or any air exchanged) due to staff shortages, etc.
Eggs that were obviously infertile were removed when found, as they are often quickly colonized by mold, fungi, bacteria, etc. Phorid flies are another concern...the larvae are able to enter eggs via air pores, from the surface of the egg! Attempts were made to control mold on live eggs, not always successfully, with a variety of compounds...acriflavin worked well, as I recall. Where eggs were joined to others in the clutch, as with many snakes, decisions were made on a case by case basis...could the egg be removed w/o damaging others, etc...
best, frank